Information for motif52


Reverse Opposite:

p-value:1e-41
log p-value:-9.514e+01
Information Content per bp:1.530
Number of Target Sequences with motif121.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets98.5 +/- 55.5bp
Average Position of motif in Background62.4 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGACCAGT----
NNAGGGACAAGGGCNC

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGACCAGT
CCAGGAACAG-

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGACCAGT-
GGGAGGACNG

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGACCAGT-----
CATAAGACCACCATTAC

MA0502.1_NFYB/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGACCAGT---
AAATGGACCAATCAG

MA0060.2_NFYA/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGACCAGT---------
TGGACCAATCAGCACTCT

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGACCAGT--
ACTAGCCAATCA

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGACCAGT-----
NNNNTGAGCACTGTNNG

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGACCAGT
CGGAGC---

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGACCAGT
TGACCT--