Information for motif9


Reverse Opposite:

p-value:1e-83
log p-value:-1.927e+02
Information Content per bp:1.530
Number of Target Sequences with motif114.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets93.3 +/- 57.6bp
Average Position of motif in Background154.2 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAGCAGCT
SCTGTCARCACC-

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CTGCCAGCAGCT--
----CAGCAGCTGN

MA0597.1_THAP1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGCCAGCAGCT
CTGCCCGCA---

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTGCCAGCAGCT---
---NNAGCAGCTGCT

MA0522.1_Tcf3/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTGCCAGCAGCT---
----NTGCAGCTGTG

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTGCCAGCAGCT
----CAGCTGNT

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGCCAGCAGCT
TTGCCAAG----

MA0500.1_Myog/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTGCCAGCAGCT---
----NNGCAGCTGTC

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGCCAGCAGCT-------
--CTCAGCAGCTGCTACTG

MA0521.1_Tcf12/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTGCCAGCAGCT---
----NNGCAGCTGTT