Information for motif1


Reverse Opposite:

p-value:1e-16
log p-value:-3.708e+01
Information Content per bp:1.859
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets127.8 +/- 38.0bp
Average Position of motif in Background108.1 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0074.1_Sox8_1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCAATTTATTGT------
-GTATCTATTGTTCTTTA

PB0063.1_Sox13_1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TCAATTTATTGT------
--AANTTATTGTTCTNNA

PB0072.1_Sox5_1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TCAATTTATTGT------
--NNTTTATTGTTCTNNN

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TCAATTTATTGT---
NTNAATTTTATTGNATT

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TCAATTTATTGT------
-ANNTCTATTGTTCNNNA

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TCAATTTATTGT-
----CTCATTGTC

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCAATTTATTGT--
AATCAATTCAATAATT

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCAATTTATTGT--------
TNNANNTCTATTGTTNTNNANN

PB0066.1_Sox17_1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCAATTTATTGT----
-NNATNAATTGTTTNN

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCAATTTATTGT----
NAATTTTATTACCNNN