Information for motif14


Reverse Opposite:

p-value:1e-12
log p-value:-2.793e+01
Information Content per bp:1.855
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets85.4 +/- 57.3bp
Average Position of motif in Background85.0 +/- 45.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.62
Offset:6
Orientation:forward strand
Alignment:ATGTCATTGCCA--
------TTGCCAAG

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:ATGTCATTGCCA-
-------TGCCAA

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATGTCATTGCCA
--GTCATN----

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ATGTCATTGCCA-
NAGGTCANTGACCT

PB0169.1_Sox15_2/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATGTCATTGCCA
TNGAATTTCATTNAN-

MA0488.1_JUN/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------ATGTCATTGCCA
AAGATGATGTCAT-----

MA0067.1_Pax2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ATGTCATTGCCA
-AGTCACGC---

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATGTCATTGCCA
AGGTCAAGGTCA

PH0061.1_Hoxb6/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ATGTCATTGCCA---
NNNGTAATTACNNATA

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------ATGTCATTGCCA
AATTACCTGTCAATAC--