Information for motif25


Reverse Opposite:

p-value:1e-9
log p-value:-2.247e+01
Information Content per bp:1.891
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets82.8 +/- 65.2bp
Average Position of motif in Background40.1 +/- 36.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0075.1_Prrx2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TAATTTTCGTGG
TAATT-------

PH0023.1_Dlx4/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTTTCGTGG
GTCGGTAATTATNGNGN

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TAATTTTCGTGG
CTAATT-------

PB0032.1_IRC900814_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TAATTTTCGTGG--
GNNATTTGTCGTAANN

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAATTTTCGTGG---
NNAATTTTATTGGNTN

PH0072.1_Hoxc8/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------TAATTTTCGTGG
TTGGGGTAATTAACGT--

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TAATTTTCGTGG---
NNANTTTTATTGGNNN

PH0022.1_Dlx3/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTTTCGTGG
NNNGGTAATTATNGNGN

PB0165.1_Sox11_2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TAATTTTCGTGG-
AAAATTGTTATGAA

PH0052.1_Hoxa5/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------TAATTTTCGTGG
NTGAGCTAATTACCNT--