Information for motif3


Reverse Opposite:

p-value:1e-14
log p-value:-3.412e+01
Information Content per bp:1.713
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif58.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets91.7 +/- 46.9bp
Average Position of motif in Background96.1 +/- 55.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------CAATCCCTAGAC
GANNATTAATCCCTNNN-

PH0129.1_Otx1/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------CAATCCCTAGAC
NNNAATTAATCCCCNCN-

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CAATCCCTAGAC
NTTGTTAATCCCTCTNN

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------CAATCCCTAGAC
GNNNATTAATCCCTNCN-

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAATCCCTAGAC
TAATCCCN----

MA0038.1_Gfi1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAATCCCTAGAC
CAAATCACTG---

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAATCCCTAGAC
AATCGTTAATCCCTTTA-

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAATCCCTAGAC
AGATGCAATCCC-----

MA0463.1_Bcl6/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAATCCCTAGAC----
--TTTCCTAGAAAGCA

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CAATCCCTAGAC
NANANTTAATCCCNNNN-