Information for motif35


Reverse Opposite:

p-value:1e-7
log p-value:-1.744e+01
Information Content per bp:1.821
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif60.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets113.8 +/- 49.0bp
Average Position of motif in Background101.7 +/- 54.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0522.1_Tcf3/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACCSGGCTGC--
-CACAGCTGCAG

MA0048.1_NHLH1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACCSGGCTGC--
NCGCAGCTGCGN

PB0077.1_Spdef_1/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ACCSGGCTGC--
AANNATCCGGATGTNN

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ACCSGGCTGC-
CCCCCTGCTGTG

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------ACCSGGCTGC
NNCNTGACCCCGCTCT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------ACCSGGCTGC
NNNNTGACCCGGCGCG

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ACCSGGCTGC----
TCNCCTGCTGNGNNN

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:ACCSGGCTGC
----NGCTN-

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ACCSGGCTGC----
NNTCCTGCTGTGNNN

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACCSGGCTGC
ANCAGGATGT