Information for motif36


Reverse Opposite:

p-value:1e-7
log p-value:-1.679e+01
Information Content per bp:1.912
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif544.3
Percentage of Background Sequences with motif2.01%
Average Position of motif in Targets96.3 +/- 53.7bp
Average Position of motif in Background100.6 +/- 56.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAA
TNNGGGCAG

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GAGGGCAA----
CTCCAGGGGTCAATTGA

MA0160.1_NR4A2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAGGGCAA
AAGGTCAC

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGGGCAA
-AGGTCA-

MA0512.1_Rxra/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCAA-
CAAAGGTCAGA

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GAGGGCAA----
GGCGAGGGGTCAAGGGC

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGGCAA----
NTNNNGGGGTCANGNNN

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCAA
CAAAGGTCAG

MA0071.1_RORA_1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAGGGCAA
ATCAAGGTCA-

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCAA
TCAAGGTCAN