Information for motif38


Reverse Opposite:

p-value:1e-6
log p-value:-1.552e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets78.5 +/- 38.7bp
Average Position of motif in Background115.3 +/- 39.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-ATCGAAGTACTT----
NATTTAAGTACTTANNA

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-ATCGAAGTACTT----
ACTCCAAGTACTTGGAA

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-ATCGAAGTACTT----
NATTTAAGTACTTNAAA

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ATCGAAGTACTT----
CNTTAAGTACTTAANG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ATCGAAGTACTT--
----AAGCACTTAA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----ATCGAAGTACTT
NNNAGATCAAAGGANNN

PB0082.1_Tcf3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----ATCGAAGTACTT
TATAGATCAAAGGAAAA

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----ATCGAAGTACTT
NANAGATCAAAGGGNNN

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----ATCGAAGTACTT
TATAGATCAAAGGAAAA

MA0124.1_NKX3-1/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:forward strand
Alignment:ATCGAAGTACTT-
------ATACTTA