Information for motif39


Reverse Opposite:

p-value:1e-6
log p-value:-1.510e+01
Information Content per bp:1.962
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets111.8 +/- 47.6bp
Average Position of motif in Background108.9 +/- 54.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0479.1_FOXH1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGTGCATTCT-
TGTGGATTNNN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGTGCATTCT
NNTGTGGATTSS

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AGTGCATTCT-
AATCGCACTGCATTCCG

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCATTCT
GGGATTGCATNN-

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGTGCATTCT
TTAAGTGGA----

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGTGCATTCT----
CCTTGCAATTTTTNN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCATTCT
TTAAGTGCTT---

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCATTCT
TTGAGTGSTT---

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AGTGCATTCT
GGCAAAAGTCCAATAA

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGTGCATTCT---
---RCATTCCWGG