Information for motif40


Reverse Opposite:

p-value:1e-6
log p-value:-1.400e+01
Information Content per bp:1.826
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif331.9
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets104.9 +/- 61.6bp
Average Position of motif in Background97.1 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ACTTACGT-
NNACTTACCTN

PB0027.1_Gmeb1_1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ACTTACGT------
NNNTNGTACGTAANNNN

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.70
Offset:3
Orientation:forward strand
Alignment:ACTTACGT---
---TACGTGCV

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ACTTACGT
--TGACGT

MA0124.1_NKX3-1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACTTACGT
ATACTTA---

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACTTACGT----
ACTTTCGTTTCT

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ACTTACGT--
GGGTACGTGC

MA0025.1_NFIL3/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ACTTACGT--
ANGTTACATAA

ETS(ETS)/Promoter/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ACTTACGT--
ACTTCCGGTT

MA0032.1_FOXC1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ACTTACGT---
---TACTNNNN