Information for motif44


Reverse Opposite:

p-value:1e-5
log p-value:-1.226e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets83.6 +/- 60.5bp
Average Position of motif in Background48.4 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0112.1_E2F2_2/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCAAAC--
CCTTCGGCGCCAAAAGG

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCAAAC--
AGCTCGGCGCCAAAAGC

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCCAAAC
CGGAGC-----

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GGAGCCAAAC
--TGCCAA--

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCAAAC-
ACTAGCCAATCA

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCAAAC-
AGGTGHCAGACA

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGAGCCAAAC--
--AGCCAATCGG

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCCAAAC--
AGGTGNCAGACAG

PB0034.1_Irf4_1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCAAAC----
CGTATCGAAACCAAA

PB0035.1_Irf5_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGAGCCAAAC---
ATAAACCGAAACCAA