Information for motif1


Reverse Opposite:

p-value:1e-45
log p-value:-1.039e+02
Information Content per bp:1.694
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets88.9 +/- 49.1bp
Average Position of motif in Background132.0 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TCATCCATATTT-
TNNATTATGCATANNTT

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCATCCATATTT
GYCATCMATCAT-

MA0095.2_YY1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCATCCATATTT
GCNGCCATCTTG

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TCATCCATATTT
NNCATTCATTCATNNN-

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCATCCATATTT-
NNTNNCAATATTAG

MF0008.1_MADS_class/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TCATCCATATTT--
----CCATATATGG

MA0507.1_POU2F2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCATCCATATTT-
ATATGCAAATNNN

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCATCCATATTT---
CCTTGCAATTTTTNN

PB0078.1_Srf_1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TCATCCATATTT----
--TTCCATATATGGAA

PH0126.1_Obox6/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCATCCATATTT
CNATAATCCGNTTNT