Information for motif11


Reverse Opposite:

p-value:1e-34
log p-value:-8.003e+01
Information Content per bp:1.696
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets92.5 +/- 54.5bp
Average Position of motif in Background64.4 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0172.1_Tlx2/Jaspar

Match Rank:1
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----AGTTAATAACTA
TAATTAATTAATAACTA

MA0046.1_HNF1A/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGTTAATAACTA--
GGTTAATAATTAAC

PH0018.1_Dbx1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGTTAATAACTA----
TAATTAATTAATAATTA

PH0071.1_Hoxc6/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGTTAATAACTA---
CAAATTAATTAATAAAA

MA0153.1_HNF1B/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGTTAATAACTA-
-GTTAAATATTAA

PH0051.1_Hoxa4/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATAACTA---
CNAGTTAATTAATAANN

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGTTAATAACTA------
-GANGTTAACTAGTTTNN

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGTTAATAACTA-
GGTTAAACATTAA

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGTTAATAACTA----
AGTAATTAATTACTTC

PH0054.1_Hoxa7_1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGTTAATAACTA---
CGAGTTAATTAATAAGC