Information for motif20


Reverse Opposite:

p-value:1e-28
log p-value:-6.576e+01
Information Content per bp:1.874
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets108.3 +/- 52.3bp
Average Position of motif in Background101.2 +/- 57.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0002.1_Arid5a_1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TACCAACRTT--
NNTNNCAATATTAG

PB0032.1_IRC900814_1/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TACCAACRTT---
ATTTACGACAAATAGC

MA0041.1_Foxd3/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TACCAACRTT-
AAACAAACATTC

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TACCAACRTT
TACCATAGCAACGGT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TACCAACRTT
CCGCATAGCAACGGA

MA0131.1_HINFP/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TACCAACRTT-
-GCGGACGTTN

MA0032.1_FOXC1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TACCAACRTT
TACTNNNN--

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.54
Offset:-9
Orientation:forward strand
Alignment:---------TACCAACRTT----
TGTGACCCTTAGCAACCGATTAA

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TACCAACRTT
TGCCAA----

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TACCAACRTT
AGAAACGAAAGT-