Information for motif23


Reverse Opposite:

p-value:1e-27
log p-value:-6.294e+01
Information Content per bp:1.787
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets104.1 +/- 52.0bp
Average Position of motif in Background164.0 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0126.1_Obox6/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TTACTTCGTT---
CNATAATCCGNTTNT

PH0035.1_Gsc/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TTACTTCGTT--
AATCGTTAATCCCTTTA

PH0108.1_Msx3/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTACTTCGTT---
NNNTTAATTGGTTTTN

PH0025.1_Dmbx1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTACTTCGTT---
NNNATTAATCCGNTTNA

PH0129.1_Otx1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTACTTCGTT--
NNNAATTAATCCCCNCN

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTACTTCGTT---
GNNTTAATTGGTTGTT

PH0028.1_En1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTACTTCGTT---
GNATTAATTAGTTNNC

PH0006.1_Barhl2/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTACTTCGTT---
NNNTTAATTGGTTTTT

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTACTTCGTT--
GNNNATTAATCCCTNCN

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTACTTCGTT--
GANNATTAATCCCTNNN