Information for motif3


Reverse Opposite:

p-value:1e-44
log p-value:-1.035e+02
Information Content per bp:1.840
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets108.5 +/- 50.7bp
Average Position of motif in Background123.3 +/- 54.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATCAGATTCAAG
TAATCHGATTAC--

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ATCAGATTCAAG----
GACCACATTCATACAAT

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATCAGATTCAAG
GKVTCADRTTWC--

PB0105.1_Arid3a_2/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------ATCAGATTCAAG
ACCCGTATCAAATTT---

PB0169.1_Sox15_2/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ATCAGATTCAAG
TTGAATGAAATTCGA-

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ATCAGATTCAAG
TAATYNRATTAR--

PB0176.1_Sox5_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATCAGATTCAAG--
TATCATAATTAAGGA

CHR/Cell-Cycle-Exp/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ATCAGATTCAAG
--CGGTTTCAAA

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:ATCAGATTCAAG-----
---ACATTCATGACACG

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:ATCAGATTCAAG-
---GCATTCCAGN