Information for motif30


Reverse Opposite:

p-value:1e-22
log p-value:-5.239e+01
Information Content per bp:1.783
Number of Target Sequences with motif125.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif33.9
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets96.7 +/- 57.6bp
Average Position of motif in Background97.1 +/- 70.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GAATTATTCT
-AATTATT--

PB0063.1_Sox13_1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GAATTATTCT---
AANTTATTGTTCTNNA

PB0072.1_Sox5_1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GAATTATTCT---
NNTTTATTGTTCTNNN

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAATTATTCT----
TAATTGTTCTAAAC

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GAATTATTCT----
AATCAATTGTTCCGCTA

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAATTATTCT----
TTCAATTGTTCTAAAA

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAATTATTCT---
AAAATTGTTATGAA

MA0075.1_Prrx2/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAATTATTCT
-AATTA----

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GAATTATTCT---
GTATCTATTGTTCTTTA

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GAATTATTCT---
ANNTCTATTGTTCNNNA