Information for motif31


Reverse Opposite:

p-value:1e-22
log p-value:-5.194e+01
Information Content per bp:1.726
Number of Target Sequences with motif198.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif67.9
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets102.6 +/- 51.5bp
Average Position of motif in Background101.1 +/- 54.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0508.1_PRDM1/Jaspar

Match Rank:1
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----AGTGARAGTG-
AGAAAGTGAAAGTGA

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---AGTGARAGTG
GAAAGTGAAAGT-

MA0122.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTGARAGTG
TTAAGTGGA----

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTGARAGTG
GAAAGTGAAAGT-

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGTGARAGTG
NTGATTGACAGN-

MA0498.1_Meis1/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AGTGARAGTG
NNNTGAGTGACAGCT

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------AGTGARAGTG
NNNNTGCCAGTGATTG--

MA0050.2_IRF1/Jaspar

Match Rank:8
Score:0.62
Offset:-8
Orientation:reverse strand
Alignment:--------AGTGARAGTG---
AAANNGAAAGTGAAAGTAAAN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGTGARAGTG
TGAGTGACAGSC

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGTGARAGTG
CGGAAGTGAAAC--