Information for motif36


Reverse Opposite:

p-value:1e-16
log p-value:-3.827e+01
Information Content per bp:1.530
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets103.9 +/- 51.4bp
Average Position of motif in Background127.5 +/- 44.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGGCTTGAC---
NGTCACGCTTGGCTGC

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGGCTTGAC
SCAGYCADGCATGAC

MA0069.1_Pax6/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTCAGGCTTGAC--
TTCACGCATGAGTT

MA0014.2_PAX5/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTCAGGCTTGAC-------
GTCACGCTTGGCTGCNCNN

MA0164.1_Nr2e3/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTCAGGCTTGAC
--CAAGCTT---

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTCAGGCTTGAC---
CAAAGGCGTGGCCAG

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGCTTGAC
GGTCTGGCAT---

MA0067.1_Pax2/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GTCAGGCTTGAC-
-----NCGTGACN

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTCAGGCTTGAC
-CNAGGCCT---

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------GTCAGGCTTGAC
NNTNNTGTCTGGNNTNG-