Information for motif42


Reverse Opposite:

p-value:1e-11
log p-value:-2.728e+01
Information Content per bp:1.530
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets108.5 +/- 50.1bp
Average Position of motif in Background81.7 +/- 39.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CACTACGG
NCCACTTAN-

PB0106.1_Arid5a_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CACTACGG-----
CATACAATACGAAATAA

MA0143.3_Sox2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACTACGG
AACAAAGG

MA0027.1_En1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CACTACGG
GANCACTACTT

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CACTACGG---
---TACTNNNN

MA0062.2_GABPA/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CACTACGG-
NCCACTTCCGG

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CACTACGG-----
TNNTGCTACTGTNNNN

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CACTACGG-----
CNNNGCTACTGTANNN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CACTACGG----
AATCGCACTGCATTCCG

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CACTACGG
RSCACTYRAG