Information for motif5


Reverse Opposite:

p-value:1e-40
log p-value:-9.325e+01
Information Content per bp:1.715
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets87.9 +/- 53.5bp
Average Position of motif in Background151.5 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0042.1_FOXI1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATCTTTATGTGA
GGATGTTTGTTT--

MF0005.1_Forkhead_class/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATCTTTATGTGA
-TGTTTATTT--

MA0025.1_NFIL3/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:ATCTTTATGTGA---
----TTATGTAACAT

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTTATGTGA--
ANTCCTTTGTCTNNNN

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ATCTTTATGTGA---
NAATTTTACGAGNTNN

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATCTTTATGTGA----
NNNNTTGTGTGCTTNN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATCTTTATGTGA
--TTTTATTRGN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATCTTTATGTGA-----
NTNNTTAAGTGGNTNAN

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATCTTTATGTGA-----
NTNNTTAAGTGGTTANN

MA0036.2_GATA2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ATCTTTATGTGA
AGATTCTTATCTGT