Information for motif13


Reverse Opposite:

p-value:1e-22
log p-value:-5.169e+01
Information Content per bp:1.820
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.7 +/- 54.7bp
Average Position of motif in Background192.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCGTGCACGG
GGACGTGC----

MA0464.1_Bhlhe40/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCGTGCACGG
CTCACGTGCAC--

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCGTGCACGG
TACGTGCV---

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCGTGCACGG---
NTNTATGTGCACATNNN

PB0026.1_Gm397_1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TCGTGCACGG----
CAGATGTGCACATACGT

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCGTGCACGG
GGGTACGTGC----

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TCGTGCACGG
TGCGTG-----

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TCGTGCACGG---
GCCGCGCAGTGCGT

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCGTGCACGG----
ACATGCCCGGGCAT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCGTGCACGG
TTGCGTGCVA--