Information for motif24


Reverse Opposite:

p-value:1e-17
log p-value:-3.945e+01
Information Content per bp:1.523
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets98.7 +/- 52.4bp
Average Position of motif in Background87.8 +/- 44.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACATAGCCCTTA
AAGATATCCTT--

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:ACATAGCCCTTA-
-----BCMATTAG

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ACATAGCCCTTA
ACAAAG------

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:ACATAGCCCTTA-
---AAGCACTTAA

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:ACATAGCCCTTA--
----GGCCATTAAC

MA0597.1_THAP1/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:ACATAGCCCTTA
---CTGCCCGCA

MA0033.1_FOXL1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---ACATAGCCCTTA
TATACATA-------

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:ACATAGCCCTTA
--CNAGGCCT--

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:ACATAGCCCTTA-
---AASCACTCAA

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:ACATAGCCCTTA-----
CATAACCACTTAACAAC