Information for motif29


Reverse Opposite:

p-value:1e-15
log p-value:-3.605e+01
Information Content per bp:1.864
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif110.7
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets94.0 +/- 53.8bp
Average Position of motif in Background100.9 +/- 66.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ACWCCGSG
GCTCCG--

PB0103.1_Zic3_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACWCCGSG----
NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ACWCCGSG----
ACCCCCCCGGGGGGN

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------ACWCCGSG---
TACGAGACTCCTCTAAC

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------ACWCCGSG--
NNNNTGACCCGGCGCG

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------ACWCCGSG--
NNANTTGACCCCTNNNN

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ACWCCGSG-----
CACCCCCGGGGGGG

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------ACWCCGSG--
ATAAATGACACCTATCA

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ACWCCGSG------
NNNACCGAGAGTNNN

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------ACWCCGSG--
NNCNTGACCCCGCTCT