Information for motif3


Reverse Opposite:

p-value:1e-33
log p-value:-7.614e+01
Information Content per bp:1.535
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets106.2 +/- 57.8bp
Average Position of motif in Background48.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0103.1_Zic3_1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCCGCGGCGG---
CCCCCCCGGGGGGGT

PB0102.1_Zic2_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCCGCGGCGG---
CCCCCCCGGGGGGGT

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCCGCGGCGG-
ATTGCCTGAGGCAAT

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCCGCGGCGG--
CACCCCCGGGGGGG

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCCGCGGCGG-
ATTGCCTGAGGCGAA

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCGCGGCGG-
ATTCCCTGAGGGGAA

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCGCGGCGG-
ATTGCCTCAGGCAAT

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCGGCGG
WTGSCCTSAGGS--

MA0524.1_TFAP2C/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCCGCGGCGG--
TGCCCTGGGGCNANN

MA0470.1_E2F4/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCGGCGG
NNTTCCCGCCC---