Information for motif35


Reverse Opposite:

p-value:1e-13
log p-value:-3.019e+01
Information Content per bp:1.530
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets119.1 +/- 59.2bp
Average Position of motif in Background134.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TACAGCAGGTCC
GAGCACAGCAGGACA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TACAGCAGGTCC
CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TACAGCAGGTCC
CCACACAGCAGGAGA

MA0461.1_Atoh1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TACAGCAGGTCC
--CAGATGGC--

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TACAGCAGGTCC
-NCAGCTGCTG-

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TACAGCAGGTCC--
GVACAGNMTGTYCTB

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TACAGCAGGTCC
--CAGCTGNT--

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TACAGCAGGTCC
CCACACAGCAGGAGA

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TACAGCAGGTCC--
GRACAGWMTGTYCTB

MA0113.2_NR3C1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TACAGCAGGTCC-
AGAACAGAATGTTCT