Information for motif36


Reverse Opposite:

p-value:1e-12
log p-value:-2.965e+01
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets109.2 +/- 48.8bp
Average Position of motif in Background72.3 +/- 44.3bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.71
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CTCGGAAAATCA
AAACCTCGTAAAATTT

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CTCGGAAAATCA
AAAGCTCGTAAAATTT

PB0075.1_Sp100_1/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTCGGAAAATCA
ATTTTACGGAAAAT--

MA0152.1_NFATC2/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTCGGAAAATCA
--TGGAAAA---

PH0077.1_Hoxd12/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CTCGGAAAATCA-
CAAGGTCGTAAAATCTT

MA0038.1_Gfi1/Jaspar

Match Rank:6
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CTCGGAAAATCA---
-----CAAATCACTG

MA0107.1_RELA/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTCGGAAAATCA-
---GGAAATTCCC

PH0076.1_Hoxd11/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTCGGAAAATCA-
TAAGGTCGTAAAATCCT

PB0115.1_Ehf_2/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTCGGAAAATCA-
AAGATCGGAANTNNNA

PH0037.1_Hdx/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTCGGAAAATCA-----
AAGGCGAAATCATCGCA