Information for motif38


Reverse Opposite:

p-value:1e-11
log p-value:-2.658e+01
Information Content per bp:1.909
Number of Target Sequences with motif86.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif48.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets103.9 +/- 56.4bp
Average Position of motif in Background88.6 +/- 48.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-ACTTGACC-------
NNCNTGACCCCGCTCT

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ACTTGACC-------
NNANTTGACCCCTNNNN

E-box(HLH)/Promoter/Homer

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ACTTGACC--
TCACGTGACCGG

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:ACTTGACC-
---TGACCT

MA0093.2_USF1/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---ACTTGACC
GCCACGTGACC

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------ACTTGACC--
TAAGCCACTTGAAATT

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACTTGACC-------
TGTCGTGACCCCTTAAT

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------ACTTGACC--
TAAGCCACTTGAAATT

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACTTGACC-
TGACCTTGACCT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ACTTGACC-------
NNNNTGACCCGGCGCG