Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 12609)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 16474)	% of Background Sequences with Motif
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-6	-1.564e+01	0.0000	87.0	0.69%	62.6	0.38%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-6	-1.508e+01	0.0000	823.0	6.50%	903.5	5.46%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.416e+01	0.0001	2161.0	17.06%	2563.6	15.49%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-5	-1.297e+01	0.0001	612.0	4.83%	663.8	4.01%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-5	-1.277e+01	0.0001	1318.0	10.40%	1525.8	9.22%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-5	-1.276e+01	0.0001	134.0	1.06%	115.1	0.70%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-5	-1.269e+01	0.0001	78.0	0.62%	58.2	0.35%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-1.086e+01	0.0006	800.0	6.31%	904.6	5.46%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-1.049e+01	0.0008	714.0	5.64%	802.1	4.85%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-4	-1.021e+01	0.0009	363.0	2.87%	383.6	2.32%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-4	-9.612e+00	0.0015	141.0	1.11%	131.1	0.79%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-8.785e+00	0.0031	1298.0	10.25%	1539.2	9.30%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-8.542e+00	0.0037	1704.0	13.45%	2052.3	12.40%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-3	-8.126e+00	0.0052	214.0	1.69%	219.5	1.33%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-8.004e+00	0.0055	1180.0	9.31%	1400.0	8.46%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.937e+00	0.0055	87.0	0.69%	77.6	0.47%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-7.866e+00	0.0056	278.0	2.19%	295.6	1.79%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-7.458e+00	0.0079	1084.0	8.56%	1286.1	7.77%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.198e+00	0.0097	964.0	7.61%	1139.8	6.89%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-3	-7.184e+00	0.0097	53.0	0.42%	43.8	0.26%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-3	-7.080e+00	0.0099	172.0	1.36%	175.9	1.06%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.797e+00	0.0125	279.0	2.20%	302.0	1.82%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-6.267e+00	0.0203	879.0	6.94%	1043.1	6.30%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-2	-5.985e+00	0.0258	1646.0	12.99%	2014.2	12.17%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.670e+00	0.0339	931.0	7.35%	1115.8	6.74%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-5.527e+00	0.0376	177.0	1.40%	188.1	1.14%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-5.131e+00	0.0539	84.0	0.66%	82.8	0.50%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-5.029e+00	0.0575	1509.0	11.91%	1855.8	11.21%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-5.002e+00	0.0575	722.0	5.70%	861.1	5.20%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-4.954e+00	0.0579	869.0	6.86%	1046.1	6.32%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-4.857e+00	0.0617	220.0	1.74%	243.8	1.47%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-4.746e+00	0.0668	726.0	5.73%	869.9	5.25%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-2	-4.743e+00	0.0668	1140.0	9.00%	1391.1	8.40%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.525e+00	0.0784	325.0	2.57%	373.3	2.26%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-4.471e+00	0.0804	1046.0	8.26%	1276.6	7.71%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.453e+00	0.0804	318.0	2.51%	365.9	2.21%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-4.244e+00	0.0954	234.0	1.85%	264.7	1.60%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-4.069e+00	0.1107	260.0	2.05%	297.3	1.80%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-4.069e+00	0.1107	508.0	4.01%	604.3	3.65%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.985e+00	0.1144	266.0	2.10%	305.6	1.85%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.951e+00	0.1154	1437.0	11.34%	1782.6	10.77%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.840e+00	0.1258	701.0	5.53%	849.1	5.13%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.766e+00	0.1324	542.0	4.28%	650.1	3.93%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.756e+00	0.1324	502.0	3.96%	600.2	3.63%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.753e+00	0.1324	784.0	6.19%	955.1	5.77%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-1	-3.726e+00	0.1324	396.0	3.13%	468.3	2.83%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-3.719e+00	0.1324	75.0	0.59%	77.9	0.47%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.608e+00	0.1389	511.0	4.03%	613.6	3.71%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.534e+00	0.1466	318.0	2.51%	374.0	2.26%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.519e+00	0.1466	130.0	1.03%	143.8	0.87%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-3.396e+00	0.1617	1273.0	10.05%	1583.3	9.56%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.261e+00	0.1814	57.0	0.45%	58.1	0.35%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-3.155e+00	0.1978	806.0	6.36%	993.0	6.00%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.099e+00	0.2054	385.0	3.04%	461.8	2.79%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.080e+00	0.2055	5816.0	45.91%	7475.7	45.16%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.080e+00	0.2055	1930.0	15.23%	2433.3	14.70%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.991e+00	0.2167	431.0	3.40%	520.7	3.15%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.944e+00	0.2233	78.0	0.62%	84.5	0.51%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.939e+00	0.2233	3750.0	29.60%	4792.0	28.95%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.848e+00	0.2377	900.0	7.10%	1117.9	6.75%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.811e+00	0.2425	430.0	3.39%	521.7	3.15%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.787e+00	0.2445	1661.0	13.11%	2094.4	12.65%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-2.733e+00	0.2540	1011.0	7.98%	1261.5	7.62%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.662e+00	0.2684	150.0	1.18%	173.9	1.05%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.623e+00	0.2746	571.0	4.51%	702.5	4.24%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.557e+00	0.2890	2591.0	20.45%	3301.1	19.94%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.439e+00	0.3205	597.0	4.71%	738.3	4.46%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.407e+00	0.3259	503.0	3.97%	619.8	3.74%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.398e+00	0.3259	1170.0	9.24%	1472.2	8.89%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-2.376e+00	0.3265	1052.0	8.30%	1321.2	7.98%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.247e+00	0.3661	2496.0	19.70%	3188.8	19.26%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.245e+00	0.3661	512.0	4.04%	633.1	3.82%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.193e+00	0.3761	285.0	2.25%	346.2	2.09%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.182e+00	0.3761	349.0	2.75%	427.2	2.58%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.132e+00	0.3890	538.0	4.25%	668.1	4.04%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.051e+00	0.4163	1078.0	8.51%	1363.0	8.23%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.933e+00	0.4622	336.0	2.65%	414.9	2.51%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.915e+00	0.4646	822.0	6.49%	1036.9	6.26%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.910e+00	0.4646	1273.0	10.05%	1617.4	9.77%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.900e+00	0.4646	382.0	3.02%	473.0	2.86%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.818e+00	0.4930	304.0	2.40%	375.7	2.27%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-1.811e+00	0.4930	2504.0	19.76%	3214.3	19.42%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.795e+00	0.4930	423.0	3.34%	527.0	3.18%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.790e+00	0.4930	124.0	0.98%	148.8	0.90%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.750e+00	0.5027	630.0	4.97%	793.9	4.80%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.700e+00	0.5225	1654.0	13.06%	2116.1	12.78%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.690e+00	0.5225	136.0	1.07%	164.7	1.00%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.676e+00	0.5233	778.0	6.14%	985.7	5.95%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.661e+00	0.5248	131.0	1.03%	158.1	0.96%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.632e+00	0.5344	187.0	1.48%	229.8	1.39%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.593e+00	0.5494	174.0	1.37%	213.8	1.29%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.569e+00	0.5571	497.0	3.92%	626.6	3.79%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.551e+00	0.5607	1795.0	14.17%	2304.3	13.92%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.544e+00	0.5607	18.0	0.14%	19.3	0.12%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.544e+00	0.5607	3909.0	30.85%	5053.4	30.53%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.535e+00	0.5607	99.0	0.78%	119.2	0.72%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.463e+00	0.5871	31.0	0.24%	35.0	0.21%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.456e+00	0.5871	1860.0	14.68%	2392.8	14.46%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.417e+00	0.6024	1952.0	15.41%	2513.5	15.18%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.386e+00	0.6150	3152.0	24.88%	4075.5	24.62%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.320e+00	0.6508	582.0	4.59%	741.6	4.48%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.306e+00	0.6532	1629.0	12.86%	2098.8	12.68%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.251e+00	0.6839	85.0	0.67%	104.3	0.63%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.242e+00	0.6839	165.0	1.30%	206.1	1.25%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.241e+00	0.6839	2326.0	18.36%	3007.9	18.17%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.238e+00	0.6839	306.0	2.42%	388.0	2.34%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.201e+00	0.6916	684.0	5.40%	876.3	5.29%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.160e+00	0.7142	325.0	2.57%	413.1	2.50%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.142e+00	0.7206	160.0	1.26%	201.1	1.21%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.138e+00	0.7206	1125.0	8.88%	1450.9	8.76%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.129e+00	0.7206	633.0	5.00%	812.1	4.91%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.114e+00	0.7207	80.0	0.63%	100.0	0.60%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.106e+00	0.7207	417.0	3.29%	533.8	3.22%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.103e+00	0.7207	23.0	0.18%	27.6	0.17%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.087e+00	0.7213	97.0	0.77%	121.4	0.73%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.059e+00	0.7355	386.0	3.05%	494.3	2.99%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.044e+00	0.7402	148.0	1.17%	187.9	1.14%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.039e+00	0.7402	95.0	0.75%	119.6	0.72%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.031e+00	0.7402	492.0	3.88%	632.4	3.82%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-9.916e-01	0.7605	733.0	5.79%	946.9	5.72%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.592e-01	0.7791	2047.0	16.16%	2658.1	16.06%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-9.431e-01	0.7852	77.0	0.61%	98.0	0.59%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-9.336e-01	0.7862	1171.0	9.24%	1518.9	9.18%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-9.232e-01	0.7881	512.0	4.04%	661.9	4.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.833e-01	0.8136	7.0	0.06%	8.3	0.05%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.524e-01	0.8325	1748.0	13.80%	2274.2	13.74%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.504e-01	0.8325	63.0	0.50%	80.6	0.49%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.397e-01	0.8325	261.0	2.06%	337.9	2.04%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.378e-01	0.8325	184.0	1.45%	237.1	1.43%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-8.281e-01	0.8325	10.0	0.08%	12.4	0.07%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-8.063e-01	0.8385	6.0	0.05%	7.0	0.04%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-8.061e-01	0.8385	688.0	5.43%	894.1	5.40%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-8.001e-01	0.8385	865.0	6.83%	1125.1	6.80%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.938e-01	0.8385	13.0	0.10%	16.4	0.10%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.802e-01	0.8385	220.0	1.74%	285.3	1.72%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.490e-01	0.8552	438.0	3.46%	570.4	3.45%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.273e-01	0.8676	1234.0	9.74%	1610.0	9.73%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.259e-01	0.8676	193.0	1.52%	251.6	1.52%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.110e-01	0.8692	277.0	2.19%	361.6	2.18%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.935e-01	0.8783	2608.0	20.59%	3408.0	20.59%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.836e-01	0.8807	796.0	6.28%	1040.3	6.28%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.605e-01	0.8949	1297.0	10.24%	1696.2	10.25%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.574e-01	0.8949	3316.0	26.17%	4335.1	26.19%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.544e-01	0.8949	272.0	2.15%	356.1	2.15%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.535e-01	0.8949	655.0	5.17%	857.8	5.18%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.418e-01	0.8949	58.0	0.46%	77.0	0.47%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.360e-01	0.8949	93.0	0.73%	122.7	0.74%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.277e-01	0.8949	32.0	0.25%	42.8	0.26%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.260e-01	0.8949	376.0	2.97%	493.2	2.98%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.093e-01	0.8949	2099.0	16.57%	2748.8	16.61%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.945e-01	0.8990	244.0	1.93%	321.1	1.94%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.925e-01	0.8990	231.0	1.82%	304.8	1.84%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-5.906e-01	0.8990	517.0	4.08%	679.0	4.10%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.660e-01	0.9070	5008.0	39.53%	6555.0	39.60%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.591e-01	0.9074	39.0	0.31%	52.7	0.32%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.460e-01	0.9135	527.0	4.16%	694.5	4.20%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-5.381e-01	0.9149	1195.0	9.43%	1570.6	9.49%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.199e-01	0.9257	953.0	7.52%	1254.2	7.58%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.132e-01	0.9261	663.0	5.23%	874.9	5.29%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-5.021e-01	0.9306	2055.0	16.22%	2699.4	16.31%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.743e-01	0.9509	96.0	0.76%	129.3	0.78%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.731e-01	0.9509	1274.0	10.06%	1679.0	10.14%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.704e-01	0.9509	1283.0	10.13%	1690.3	10.21%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.703e-01	0.9509	1222.0	9.65%	1610.6	9.73%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.673e-01	0.9509	1652.0	13.04%	2174.9	13.14%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-4.653e-01	0.9509	1526.0	12.05%	2009.1	12.14%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.284e-01	0.9597	1802.0	14.22%	2374.9	14.35%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.213e-01	0.9609	264.0	2.08%	353.1	2.13%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.146e-01	0.9615	107.0	0.84%	145.8	0.88%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-4.131e-01	0.9615	842.0	6.65%	1115.6	6.74%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.100e-01	0.9615	1880.0	14.84%	2478.8	14.97%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.053e-01	0.9615	682.0	5.38%	905.2	5.47%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.924e-01	0.9615	2801.0	22.11%	3687.5	22.28%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-3.795e-01	0.9673	721.0	5.69%	958.8	5.79%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.611e-01	0.9796	355.0	2.80%	476.2	2.88%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.579e-01	0.9796	336.0	2.65%	451.5	2.73%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-3.552e-01	0.9796	2032.0	16.04%	2683.3	16.21%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.548e-01	0.9796	1047.0	8.26%	1389.3	8.39%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.290e-01	0.9890	526.0	4.15%	704.9	4.26%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.039e-01	1.0000	183.0	1.44%	250.9	1.52%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.027e-01	1.0000	42.0	0.33%	60.6	0.37%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.838e-01	1.0000	1222.0	9.65%	1626.1	9.82%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.829e-01	1.0000	1055.0	8.33%	1406.8	8.50%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.761e-01	1.0000	629.0	4.96%	844.8	5.10%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.692e-01	1.0000	1321.0	10.43%	1758.6	10.62%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.653e-01	1.0000	534.0	4.22%	719.2	4.34%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-2.580e-01	1.0000	17.0	0.13%	26.0	0.16%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.506e-01	1.0000	746.0	5.89%	1001.6	6.05%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.459e-01	1.0000	193.0	1.52%	266.4	1.61%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.413e-01	1.0000	2815.0	22.22%	3726.2	22.51%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.042e-01	1.0000	15.0	0.12%	24.6	0.15%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.002e-01	1.0000	64.0	0.51%	93.9	0.57%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.000e-01	1.0000	320.0	2.53%	439.1	2.65%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.953e-01	1.0000	784.0	6.19%	1057.6	6.39%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.840e-01	1.0000	337.0	2.66%	463.0	2.80%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.813e-01	1.0000	497.0	3.92%	677.2	4.09%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.765e-01	1.0000	1928.0	15.22%	2571.3	15.53%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.732e-01	1.0000	2422.0	19.12%	3222.2	19.47%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.680e-01	1.0000	87.0	0.69%	126.6	0.77%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.598e-01	1.0000	2069.0	16.33%	2760.6	16.68%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.580e-01	1.0000	99.0	0.78%	143.8	0.87%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.507e-01	1.0000	208.0	1.64%	292.5	1.77%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-1.507e-01	1.0000	77.0	0.61%	113.0	0.68%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.350e-01	1.0000	991.0	7.82%	1340.7	8.10%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.327e-01	1.0000	204.0	1.61%	288.7	1.74%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.313e-01	1.0000	5292.0	41.77%	6998.3	42.28%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.299e-01	1.0000	1126.0	8.89%	1520.2	9.18%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.293e-01	1.0000	268.0	2.12%	375.4	2.27%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.179e-01	1.0000	1414.0	11.16%	1904.2	11.50%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.142e-01	1.0000	404.0	3.19%	560.7	3.39%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-9.962e-02	1.0000	100.0	0.79%	148.1	0.89%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.835e-02	1.0000	214.0	1.69%	306.3	1.85%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-8.360e-02	1.0000	550.0	4.34%	761.8	4.60%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-7.743e-02	1.0000	301.0	2.38%	426.5	2.58%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-7.162e-02	1.0000	2769.0	21.86%	3708.8	22.40%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.134e-02	1.0000	192.0	1.52%	278.2	1.68%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.614e-02	1.0000	35.0	0.28%	58.5	0.35%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.600e-02	1.0000	282.0	2.23%	402.7	2.43%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.129e-02	1.0000	162.0	1.28%	238.4	1.44%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.693e-02	1.0000	3434.0	27.11%	4591.2	27.74%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.538e-02	1.0000	805.0	6.35%	1111.0	6.71%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.216e-02	1.0000	77.0	0.61%	121.0	0.73%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.216e-02	1.0000	77.0	0.61%	121.0	0.73%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.793e-02	1.0000	1.0	0.01%	4.1	0.02%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.384e-02	1.0000	5232.0	41.30%	6960.5	42.05%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.936e-02	1.0000	1294.0	10.21%	1770.6	10.70%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.811e-02	1.0000	466.0	3.68%	659.6	3.98%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.543e-02	1.0000	748.0	5.90%	1041.4	6.29%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.100e-02	1.0000	957.0	7.55%	1324.9	8.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.527e-02	1.0000	33.0	0.26%	59.0	0.36%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.077e-02	1.0000	101.0	0.80%	160.9	0.97%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.915e-02	1.0000	10.0	0.08%	23.9	0.14%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.618e-02	1.0000	771.0	6.09%	1084.7	6.55%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.482e-02	1.0000	54.0	0.43%	94.0	0.57%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.186e-02	1.0000	132.0	1.04%	208.1	1.26%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.231e-03	1.0000	231.0	1.82%	351.9	2.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.512e-03	1.0000	117.0	0.92%	190.5	1.15%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.615e-03	1.0000	88.0	0.69%	153.0	0.92%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.968e-03	1.0000	239.0	1.89%	373.8	2.26%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.699e-03	1.0000	1094.0	8.64%	1553.4	9.38%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.650e-03	1.0000	135.0	1.07%	224.0	1.35%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.109e-03	1.0000	2589.0	20.44%	3566.1	21.54%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.380e-04	1.0000	116.0	0.92%	200.7	1.21%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.970e-04	1.0000	509.0	4.02%	764.9	4.62%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.170e-04	1.0000	99.0	0.78%	177.0	1.07%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.600e-04	1.0000	319.0	2.52%	499.9	3.02%