Information for motif13


Reverse Opposite:

p-value:1e-21
log p-value:-4.958e+01
Information Content per bp:1.698
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets84.2 +/- 53.0bp
Average Position of motif in Background169.2 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TAGCCCAATGAT
ACTAGCCAATCA-

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TAGCCCAATGAT
--AGCCAATCGG

MA0502.1_NFYB/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TAGCCCAATGAT
AAATGGACCAATCAG

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TAGCCCAATGAT-
------AATAATT

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TAGCCCAATGAT----
GAAGACCAATTAGCGCT

CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TAGCCCAATGAT
GTTGCGCAAT---

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TAGCCCAATGAT-----
CGACCCAATCAACGGTG

MA0078.1_Sox17/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TAGCCCAATGAT
---GACAATGNN

MA0468.1_DUX4/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TAGCCCAATGAT
TAATTTAATCA-

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----TAGCCCAATGAT
GGCAAAAGTCCAATAA-