Information for motif17


Reverse Opposite:

p-value:1e-20
log p-value:-4.720e+01
Information Content per bp:1.698
Number of Target Sequences with motif439.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif377.8
Percentage of Background Sequences with motif1.73%
Average Position of motif in Targets97.2 +/- 53.2bp
Average Position of motif in Background100.7 +/- 53.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0005.1_Forkhead_class/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CACAAATTAACA
---AAATAAACA

PH0175.1_Vax2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CACAAATTAACA-
GTGCACTAATTAAGAC

MA0041.1_Foxd3/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CACAAATTAACA---
---AAACAAACATTC

MA0158.1_HOXA5/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACAAATTAACA
CACTAATT----

MA0042.1_FOXI1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CACAAATTAACA---
---AAACAAACANNC

PH0006.1_Barhl2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CACAAATTAACA-
AAAAACCAATTAAGAA

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CACAAATTAACA-----
--AAAAATAACAAACGG

PH0108.1_Msx3/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CACAAATTAACA-
CAAAACCAATTAATTT

MA0075.1_Prrx2/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CACAAATTAACA
----AATTA---

PH0039.1_Mnx1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CACAAATTAACA-
NNNCACTAATTANTNN