Information for motif23


Reverse Opposite:

p-value:1e-17
log p-value:-4.081e+01
Information Content per bp:1.780
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets111.8 +/- 51.1bp
Average Position of motif in Background121.2 +/- 37.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TCTCATCAAACG-
AAAGCTCGTAAAATTT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TCTCATCAAACG
NCYAATAAAA--

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TCTCATCAAACG-
AAACCTCGTAAAATTT

MA0151.1_ARID3A/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TCTCATCAAACG
----ATTAAA--

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCTCATCAAACG---
TCACCCATCAATAAACA

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TCTCATCAAACG----
TATAGATCAAAGGAAAA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCTCATCAAACG----
NNNAGATCAAAGGANNN

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCTCATCAAACG--
CTACCAATAAAATTCT

PB0023.1_Gata6_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TCTCATCAAACG-
NNANTCTTATCTNNNNN

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCTCATCAAACG----
NANAGATCAAAGGGNNN