Information for motif28


Reverse Opposite:

p-value:1e-14
log p-value:-3.376e+01
Information Content per bp:1.967
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets115.1 +/- 50.4bp
Average Position of motif in Background141.7 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ACCCTTCACC
NNGCACCTTTCTCC

MA0504.1_NR2C2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACCCTTCACC---
TGACCTCTGACCCCN

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ACCCTTCACC--
TGACCTTTGACCTC

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ACCCTTCACC-
TGACCTTGACCT

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ACCCTTCACC---
GTTGACCTTTGACCTTT

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACCCTTCACC---
TGACCTTTGCCCTAN

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ACCCTTCACC--
TGACCTTTGCCCCA

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACCCTTCACC--
TGACCTTTGCCCTA

MA0017.1_NR2F1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACCCTTCACC--
TGACCTTTGAACCT

PB0200.1_Zfp187_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ACCCTTCACC----
GAGCCCTTGTCCCTAA