Information for motif36


Reverse Opposite:

p-value:1e-12
log p-value:-2.865e+01
Information Content per bp:1.530
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets91.4 +/- 45.0bp
Average Position of motif in Background153.0 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0040.1_Foxq1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AATTGTGTAT-
TATTGTTTATT

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----AATTGTGTAT-
NNNCCATTGTGTNAN

PB0066.1_Sox17_1/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGTGTAT
NNATNAATTGTTTNN

MA0084.1_SRY/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AATTGTGTAT
-ATTGTTTAN

PB0165.1_Sox11_2/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AATTGTGTAT--
AAAATTGTTATGAA

MA0479.1_FOXH1/Jaspar

Match Rank:6
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AATTGTGTAT----
---TGTGGATTNNN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AATTGTGTAT---
-NNTGTGGATTSS

PB0175.1_Sox4_2/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----AATTGTGTAT--
GGAAAAATTGTTAGGAA

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----AATTGTGTAT---
CNNNTATTGTTCNNNNN

MA0078.1_Sox17/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATTGTGTAT
CTCATTGTC---