Information for motif38


Reverse Opposite:

p-value:1e-11
log p-value:-2.618e+01
Information Content per bp:1.977
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets118.1 +/- 53.6bp
Average Position of motif in Background121.2 +/- 45.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCCAAGGCTA
NTCAAGGTCA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCCAAGGCTA
BTCAAGGTCA

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CCCAAGGCTA-
ATTGCCTGAGGCAAT

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCCAAGGCTA-
SCCTSAGGSCAW

MA0524.1_TFAP2C/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCCAAGGCTA
CATGGCCCCAGGGCA

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCAAGGCTA-
ATTGCCTGAGGCGAA

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCCAAGGCTA-
GCCTCAGGGCAT

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCCAAGGCTA-
ANTGCCTGAGGCAAN

MA0505.1_Nr5a2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCCAAGGCTA--
AAGTTCAAGGTCAGC

MA0592.1_ESRRA/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCCAAGGCTA--
-CCAAGGTCACA