Information for motif39


Reverse Opposite:

p-value:1e-10
log p-value:-2.511e+01
Information Content per bp:1.802
Number of Target Sequences with motif959.0
Percentage of Target Sequences with motif6.11%
Number of Background Sequences with motif1070.1
Percentage of Background Sequences with motif4.91%
Average Position of motif in Targets100.1 +/- 55.5bp
Average Position of motif in Background98.9 +/- 57.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CCGGACAG----
CAAATCCAGACATCACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCGGACAG
CCAGACAG

MA0028.1_ELK1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCGGACAG
GAGCCGGAAG-

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CCGGACAG-
---CACAGN

MA0498.1_Meis1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCGGACAG--
NNNTGAGTGACAGCT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCGGACAG--
CCAGACRSVB

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCGGACAG-
RCCGGAARYN

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCGGACAG-
DCCGGAARYN

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCGGACAG------
GATATTGACAGCTGCGT

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCGGACAG------
GTATTGACAGGTNNTT