Information for motif40


Reverse Opposite:

p-value:1e-10
log p-value:-2.484e+01
Information Content per bp:1.789
Number of Target Sequences with motif276.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif250.5
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets102.9 +/- 55.7bp
Average Position of motif in Background93.2 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----CGCACAAT-----
NNNNNGAACAATTGANN

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CGCACAAT---
--GACAATGNN

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CGCACAAT-----
TCACGGAACAATAGGTG

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CGCACAAT-----
CTCACACAATGGCGC

MA0077.1_SOX9/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CGCACAAT--
-GAACAATGG

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CGCACAAT-----
TTTAGAACAATAAAAT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGCACAAT--
RNAACAATGG

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CGCACAAT---
-GAACAATGGN

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGCACAAT-----
TTAAGAACAATAAATT

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CGCACAAT
--AACAAT