Information for motif42


Reverse Opposite:

p-value:1e-10
log p-value:-2.390e+01
Information Content per bp:1.657
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets78.2 +/- 60.8bp
Average Position of motif in Background45.5 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TATAWCGTGM
TATGTNTA--

PB0080.1_Tbp_1/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------TATAWCGTGM
NANTTATATATAANGN

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TATAWCGTGM
ANNNGGATATATCCNNN

MA0108.2_TBP/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TATAWCGTGM----
GTATAAAAGGCGGGG

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TATAWCGTGM----
GTATAAAAGGCGGGG

PB0105.1_Arid3a_2/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------TATAWCGTGM
NNATNTGATANNNNN-

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TATAWCGTGM
AGATAASR---

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TATAWCGTGM
AAGATATCCTT-

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TATAWCGTGM
NBWGATAAGR---

PB0174.1_Sox30_2/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TATAWCGTGM
NCGTATTATAATCNTA