Information for motif43


Reverse Opposite:

p-value:1e-10
log p-value:-2.376e+01
Information Content per bp:1.530
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets81.6 +/- 50.2bp
Average Position of motif in Background119.5 +/- 2.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0594.1_Hoxa9/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CTGATTTAGGGG
-TGATTTATGGC

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTGATTTAGGGG-
-TGATTTATGGCC

MA0485.1_Hoxc9/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTGATTTAGGGG-
NTGATTTATGGCC

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGATTTAGGGG-
-TGATTTATGGCC

MA0038.1_Gfi1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTGATTTAGGGG
CNGTGATTTN----

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGATTTAGGGG
-TGATTGATGA-

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTGATTTAGGGG-----
--ATTTTNGGGGGGCNN

MA0057.1_MZF1_5-13/Jaspar

Match Rank:8
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CTGATTTAGGGG---
-----GGAGGGGGAA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGATTTAGGGG-
-TGATTRATGGCY

PB0184.1_Tbp_2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGATTTAGGGG---
CCGATTTAAGCGACC