Information for motif44


Reverse Opposite:

p-value:1e-9
log p-value:-2.243e+01
Information Content per bp:1.530
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets88.0 +/- 52.4bp
Average Position of motif in Background59.1 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTTTAAGTGT-----
NTNNTTAAGTGGNTNAN

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTTTAAGTGT-----
NTNNTTAAGTGGTTANN

MA0063.1_Nkx2-5/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CTTTAAGTGT
--TTAATTG-

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTTTAAGTGT-
-CTYRAGTGSY

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTTTAAGTGT-
--TTAAGTGGA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CTTTAAGTGT--
--TTGAGTGSTT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTTTAAGTGT--
--TTAAGTGCTT

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTTTAAGTGT----
AAATTCAAGTGGNTTN

MA0124.1_NKX3-1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTTTAAGTGT
---TAAGTAT

PH0041.1_Hmx1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTTTAAGTGT----
ANNCATTAATTGCTNGN