Information for motif52


Reverse Opposite:

p-value:1e-5
log p-value:-1.350e+01
Information Content per bp:1.530
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets98.6 +/- 56.1bp
Average Position of motif in Background58.4 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CATCGGTC
GCCATCTGTT

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATCGGTC-
NTATYGATCH

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CATCGGTC---
CCNNACCATCTGGCCTN

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATCGGTC--
GYCATCMATCAT

MA0512.1_Rxra/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATCGGTC---
CAAAGGTCAGA

PH0044.1_Homez/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CATCGGTC-----
AAAACATCGTTTTTAAG

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CATCGGTC-
CCAACTGCCA

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATCGGTC
NNGCAGCTGTT

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CATCGGTC
RCCATMTGTT

MA0499.1_Myod1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CATCGGTC---
TGCAGCTGTCCCT