Information for motif55


Reverse Opposite:

p-value:1e-5
log p-value:-1.180e+01
Information Content per bp:1.953
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets92.5 +/- 56.7bp
Average Position of motif in Background107.2 +/- 47.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CGTGCAAC--
---ACAACAC

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGTGCAAC
GGACGTGC---

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCAAC
TTGCGTGCVA-

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGTGCAAC
TACGTGCV--

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGTGCAAC---
AGATGCAATCCC

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGTGCAAC--
SCCTAGCAACAG

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGCAAC
GGGTACGTGC---

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGTGCAAC---
-TTGCAACATN

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGTGCAAC----
GCCGCGCAGTGCGT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGTGCAAC---
CCGCATAGCAACGGA