Information for motif8


Reverse Opposite:

p-value:1e-22
log p-value:-5.106e+01
Information Content per bp:1.825
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif0.30%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets115.3 +/- 57.2bp
Average Position of motif in Background123.3 +/- 47.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0094.1_Zfp128_1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TCTSCGTACC----
TCTTTGGCGTACCCTAA

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCTSCGTACC
GGTAAGTA--

PB0027.1_Gmeb1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TCTSCGTACC---
NNNTNGTACGTAANNNN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCTSCGTACC-
-TTGCGTGCVA

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCTSCGTACC------
TTCNAAGTACTTNNNNN

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCTSCGTACC
--TACGTGCV

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCTSCGTACC--
-NNACTTACCTN

PH0117.1_Nkx3-1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCTSCGTACC-----
NATTTAAGTACTTANNA

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCTSCGTACC----
ATTTGCATACAATGG

MA0043.1_HLF/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCTSCGTACC-
NATTACGTAACC