Information for motif27


Reverse Opposite:

p-value:1e-27
log p-value:-6.321e+01
Information Content per bp:1.693
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets108.7 +/- 55.7bp
Average Position of motif in Background105.9 +/- 48.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
TAAAGTCGTAAAACGT-

PH0047.1_Hoxa11/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
TAAAGTCGTAAAACAT-

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
AAAGCTCGTAAAATTT-

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
AAACCTCGTAAAATTT-

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
TAAAGTCGTAAAATAG-

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
CAAGGTCGTAAAATCTT

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
TAAGGTCGTAAAATCCT

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
TTAGGTCGTAAAATTTC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCTTAAAACKTG
NCYAATAAAA----

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TCTTAAAACKTG
TAAGGTAATAAAATTA-