Information for motif29


Reverse Opposite:

p-value:1e-25
log p-value:-5.941e+01
Information Content per bp:1.695
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets104.7 +/- 56.2bp
Average Position of motif in Background86.0 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0167.1_Sox13_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TGGTGGGGATTT
GTATTGGGTGGGTAATT

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGGTGGGGATTT---
---NGGGGATTTCCC

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGGTGGGGATTT--
----GGGGATTTCC

MA0056.1_MZF1_1-4/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TGGTGGGGATTT
---TGGGGA---

PH0122.1_Obox2/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGTGGGGATTT-----
TGAGGGGGATTAACTAT

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGGTGGGGATTT------
-AGAGGGGATTAATTTAT

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TGGTGGGGATTT--
----GGGAATTTCC

MA0479.1_FOXH1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGGTGGGGATTT--
---TGTGGATTNNN

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGTGGGGATTT----
CGTTGGGGATTAGCCT

MA0107.1_RELA/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TGGTGGGGATTT--
----GGGAATTTCC