Information for motif34


Reverse Opposite:

p-value:1e-21
log p-value:-5.041e+01
Information Content per bp:1.890
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets102.6 +/- 56.2bp
Average Position of motif in Background60.4 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0147.1_Max_2/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGACGCGTGA---
NNGTCGCGTGNCAC

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AGACGCGTGA
---TGCGTG-

MA0067.1_Pax2/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:AGACGCGTGA--
----NCGTGACN

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGACGCGTGA-
-KCCACGTGAC

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGACGCGTGA
-GHCACGTG-

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGACGCGTGA
-NCCACGTG-

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGACGCGTGA
GGTCACGTGA

MA0004.1_Arnt/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGACGCGTGA
---CACGTG-

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGACGCGTGA
-GNCACGTG-

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGACGCGTGA--
--TTGCGTGCVA