Information for motif39


Reverse Opposite:

p-value:1e-17
log p-value:-4.116e+01
Information Content per bp:1.835
Number of Target Sequences with motif296.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif122.1
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets100.8 +/- 56.7bp
Average Position of motif in Background102.8 +/- 73.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0024.2_E2F1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCCGCHCG
CCTCCCGCCCN

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCCGCHCG---
---GCACGTNC

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCCGCHCG--
ATAAGGGCGCGCGAT

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCGCHCG--
--BGCACGTA

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCCGCHCG--
ATAAAGGCGCGCGAT

PB0095.1_Zfp161_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCGCHCG-------
TGGCGCGCGCGCCTGA

PB0110.1_Bcl6b_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCCGCHCG-----
ATCCCCGCCCCTAAAA

POL011.1_XCPE1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCGCHCG
GGTCCCGCCC-

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCCGCHCG-----
---GCACGTACCC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCGCHCG---
-TBGCACGCAA