Information for motif40


Reverse Opposite:

p-value:1e-17
log p-value:-4.113e+01
Information Content per bp:1.971
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets83.6 +/- 55.4bp
Average Position of motif in Background154.1 +/- 36.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AACAAATGGA
AACAKATGGY

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AACAAATGGA
RNAACAATGG--

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AACAAATGGA
AAAACAAAGG--

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AACAAATGGA
AACAGATGGC

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----AACAAATGGA--
AGAAGAACAAAGGACTA

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AACAAATGGA
GAACAATGGN-

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AACAAATGGA
AAAAATAACAAACGG-

MA0143.3_Sox2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AACAAATGGA
AACAAAGG--

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AACAAATGGA--
ATAAGAACAAAGGACTA

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AACAAATGGA
RACAAWGG--