Information for motif48


Reverse Opposite:

p-value:1e-10
log p-value:-2.531e+01
Information Content per bp:1.924
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets105.6 +/- 52.2bp
Average Position of motif in Background111.4 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GCTCCGAC
GCTCCG--

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCTCCGAC---
GGCCCCGCCCCC

POL003.1_GC-box/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCTCCGAC----
NAGCCCCGCCCCCN

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTCCGAC---
YCCGCCCACGCN

POL011.1_XCPE1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCTCCGAC--
GGTCCCGCCC

MA0516.1_SP2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCTCCGAC-------
GCCCCGCCCCCTCCC

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCTCCGAC---
-CRCCCACGCA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCTCCGAC--
--CCAGACAG

PB0112.1_E2F2_2/Jaspar

Match Rank:9
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------GCTCCGAC--
NNNNTTGGCGCCGANNN

MA0079.3_SP1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTCCGAC---
GCCCCGCCCCC